I have a Dearborn Convertible 289 with no numbers stamped on the top location as discussed. My X-code GT/CS also has no stamping (this motor was rebuilt once, but according to the owner who had it rebuilt, the block and heads are the originals).
The only numbers I have seen on a block is my friends 289 HiPo?!?!
As mentioned above, I do not thing that I would discount a car if it was not numbers matching by 50% (of course unless it was highly overpriced to begin with). I think the Pricing Guide on this site is VERY accurate with the considerations of market supply/demand. I would think that if one wanted to get really picky, and they were say paying $100K for a GT500KR Convertible they could probably really want proof - but if you tried to buy it for $50K, they wouldn't sell and the next in line would buy it.
It seems to me that there are so many parts out there that are being repopped and the chances of a 35 year old car being in SOME kind of accident would generally indicate that your chances are slim to none to find an numbers matching car. Mustangs were not taken seriously (excluding Shelbys) until recently ('90+) and since then how many have received the AutoZone/Checker crate motor?
Anyway, what I have found is that a car's value is in the buyer's secret place where the nostalgic memories of yesteryear lay dormant until rekindled by sight, touch and smell.
My two bits worth.